sample_id	condition	timepoint	replicate	sample_type	contrast_group	notes
PLASMID	baseline	PLASMID	1	plasmid	baseline	Synthetic complete-demo sample; published guides only.
T0_R1	baseline	T0_R1	R1	endpoint	baseline	Synthetic complete-demo sample; published guides only.
T0_R2	baseline	T0_R2	R2	endpoint	baseline	Synthetic complete-demo sample; published guides only.
CONTROL_R1	control	endpoint	R1	endpoint	control	Synthetic complete-demo sample; published guides only.
CONTROL_R2	control	endpoint	R2	endpoint	control	Synthetic complete-demo sample; published guides only.
TREATMENT_R1	treatment	endpoint	R1	endpoint	treatment	Synthetic complete-demo sample; published guides only.
TREATMENT_R2	treatment	endpoint	R2	endpoint	treatment	Synthetic complete-demo sample; published guides only.